PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G292100.1
Common NameB456_011G292100, LOC105778418
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 239aa    MW: 26284.9 Da    PI: 8.6809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G292100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-1464110354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRRdriNs +  Lr+l+Pk+      K++Ka+ L  A+e +k+L
  Gorai.011G292100.1  64 KSHSEAEKRRRDRINSQLTALRKLIPKS-----NKMDKAALLGSAIEQVKDL 110
                         79*************************7.....5*************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.55561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1464115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1164110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-1164113No hitNo description
Gene3DG3DSA:4.10.280.103.7E-1564113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1267116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.03E-6142212No hitNo description
Gene3DG3DSA:3.30.70.2602.3E-5142203No hitNo description
PROSITE profilePS516718.803144220IPR002912ACT domain
CDDcd048731.79E-7145181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MENCYPFSLL EPPNCDGCNA AAISNEPPFV VPWPVEPLFS ASSSVRCHGF TSPAIPDKAT  60
VASKSHSEAE KRRRDRINSQ LTALRKLIPK SNKMDKAALL GSAIEQVKDL KRKATEIGKA  120
FAIPSETDEV SVDYNVPEDK TFIRVSICCD DRPEVFSELI RVLKGLRLSI VEAEISSVGG  180
RTKSNLILCN ESDNREGVSS NLKQSLNVVV NKINALSSDE SKSNYRIRSK RQRLFLSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457563.11e-173PREDICTED: transcription factor bHLH51
SwissprotQ9XEF01e-52BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A0D2TF811e-173A0A0D2TF81_G
STRINGPOPTR_0008s07090.17e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.11e-52bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]